dot-app: a Graphviz-Cytoscape conversion plug-in [version 1; referees: 1 approved, 2 approved with reservations]

dot-app: a Graphviz-Cytoscape conversion plug-in [version 1; referees: 1 approved, 2 approved with reservations]

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dot-app is a Cytoscape 3 app that allows Cytoscape to import and export Graphviz (*.dot, *.gv) files, also known as DOT files due to the *.dot extension and their conformance to read more the DOT language syntax.

The DOT format was originally created in the early 2000s to represent graph topologies, layouts and formatting.DOT-encoded files are produced and consumed by a number of open-source graph applications, including GraphViz, Gephi, neato, smyrna, and others.While DOT-based graph applications are popular, they emphasize general graph layout and styling over the topological and semantic analysis functions available in domain-focused us polo assn mens sweaters applications such as Cytoscape.While domain-focused applications have easy access to large networks (10,000 to 100,000 nodes) and advanced analysis and formatting, they do not offer all of the styling options that DOT-based applications (particularly GraphViz) do.

dot-app enables the interchange of networks between Cytoscape and DOT-based applications so that users can benefit from the features of both.dot-app was first deployed to the Cytoscape App Store in August 2015, has since registered more than 1,200 downloads, and has been highly rated by more than 20 users.